Uses of Class
de.uni_trier.wi2.procake.similarity.nest.sequence.utils.MatrixPath.MatrixCellPair

Packages that use MatrixPath.MatrixCellPair

Package	Description
de.uni_trier.wi2.procake.similarity.nest.sequence.utils
de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl

Uses of MatrixPath.MatrixCellPair in de.uni_trier.wi2.procake.similarity.nest.sequence.utils

Methods in de.uni_trier.wi2.procake.similarity.nest.sequence.utils that return MatrixPath.MatrixCellPair

Modifier and Type	Method	Description
MatrixPath.MatrixCellPair	MatrixPath.MatrixCellPair.clone()
MatrixPath.MatrixCellPair	ScoringMatrix.getPair(int queryIdx, int caseIdx)	Get the NESTTaskPair object at the specified position.
MatrixPath.MatrixCellPair	MatrixPath.MatrixCellPair.getPrevious()
MatrixPath.MatrixCellPair	ScoringMatrix.getSourceOf(int queryIdx, int caseIdx)	Get the source of a cell.
MatrixPath.MatrixCellPair	ScoringMatrix.getStartCell(boolean onlyLastRow)	Get the start cell of the alignment path.

Methods in de.uni_trier.wi2.procake.similarity.nest.sequence.utils with parameters of type MatrixPath.MatrixCellPair

Modifier and Type	Method	Description
void	MatrixPath.addPair(MatrixPath.MatrixCellPair pair)	Add a pair to the path.
MatrixPath	ScoringMatrix.backtrackFrom(MatrixPath.MatrixCellPair cell)	Create the alignment path of this scoring matrix.
double	ScoringMatrix.get(MatrixPath.MatrixCellPair pair)	Get the value of a cell.
void	ScoringMatrix.set(int queryIdx, int caseIdx, MatrixPath.MatrixCellPair source, double value)	Set a cell of the matrix to a given value and also provide a reference to the source cell.
void	ScoringMatrix.set(MatrixPath.MatrixCellPair pair)	Set a cell of the matrix to the given pair.
void	MatrixPath.MatrixCellPair.setPrevious(MatrixPath.MatrixCellPair previous)

Constructors in de.uni_trier.wi2.procake.similarity.nest.sequence.utils with parameters of type MatrixPath.MatrixCellPair

Modifier	Constructor	Description
	MatrixCellPair(int queryIdx, int caseIdx, DataObject queryObj, DataObject caseObj, double value, MatrixPath.MatrixCellPair previous)

Uses of MatrixPath.MatrixCellPair in de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl

Methods in de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl that return MatrixPath.MatrixCellPair

Modifier and Type	Method	Description
MatrixPath.MatrixCellPair	ScoringMatrixImpl.getPair(int queryIdx, int caseIdx)
MatrixPath.MatrixCellPair	ScoringMatrixImpl.getSourceOf(int queryIdx, int caseIdx)
MatrixPath.MatrixCellPair	ScoringMatrixImpl.getStartCell(boolean onlyLastRow)
MatrixPath.MatrixCellPair	MatrixPathImpl.PathIterator.next()

Methods in de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl that return types with arguments of type MatrixPath.MatrixCellPair

Modifier and Type	Method	Description
Iterator<MatrixPath.MatrixCellPair>	MatrixPathImpl.iterator()

Methods in de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl with parameters of type MatrixPath.MatrixCellPair

Modifier and Type	Method	Description
void	MatrixPathImpl.addPair(MatrixPath.MatrixCellPair pair)
MatrixPath	ScoringMatrixImpl.backtrackFrom(MatrixPath.MatrixCellPair cell)
double	ScoringMatrixImpl.get(MatrixPath.MatrixCellPair pair)
protected boolean	DPImpl.isTwoByTwoMatrix(MatrixPath.MatrixCellPair leftPair, MatrixPath.MatrixCellPair topLeftPair, MatrixPath.MatrixCellPair topPair)	Check if parameters build a two by two matrix.
void	ScoringMatrixImpl.set(int queryIdx, int caseIdx, MatrixPath.MatrixCellPair sourceCell, double value)
void	ScoringMatrixImpl.set(MatrixPath.MatrixCellPair pair)