Package de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl

Class MatrixPathImpl

java.lang.Object

de.uni_trier.wi2.procake.similarity.nest.sequence.utils.impl.MatrixPathImpl

All Implemented Interfaces:

MatrixPath, Iterable<MatrixPath.MatrixCellPair>

public class MatrixPathImpl
extends Object
implements MatrixPath

Class representing a path through a matrix. Can be used for the alignment path found by a dp algorithm.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	MatrixPathImpl.PathIterator	Iterator for the path.

Nested classes/interfaces inherited from interface de.uni_trier.wi2.procake.similarity.nest.sequence.utils.MatrixPath

MatrixPath.MatrixCellPair

Constructor Summary

Constructors

Constructor	Description
MatrixPathImpl(ScoringMatrix matrix)

Method Summary

Modifier and Type	Method	Description
void	addPair(int queryIdx, int caseIdx, DataObject queryObj, DataObject caseObj, double value)	Add a pair of indices and corresponding objects.
void	addPair(MatrixPath.MatrixCellPair pair)	Add a pair to the path.
Iterator<MatrixPath.MatrixCellPair>	iterator()
MatrixPath	reverse()	Reverse the entries in this path.
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable

forEach, spliterator

Constructor Details

MatrixPathImpl

public MatrixPathImpl(ScoringMatrix matrix)

Method Details

addPair

public void addPair(int queryIdx,
 int caseIdx,
 DataObject queryObj,
 DataObject caseObj,
 double value)

Description copied from interface: MatrixPath

Add a pair of indices and corresponding objects.

Specified by:

addPair in interface MatrixPath

addPair

public void addPair(MatrixPath.MatrixCellPair pair)

Description copied from interface: MatrixPath

Add a pair to the path.

Specified by:

addPair in interface MatrixPath

reverse

public MatrixPath reverse()

Description copied from interface: MatrixPath

Reverse the entries in this path.

Specified by:

reverse in interface MatrixPath

size

public int size()

Specified by:

size in interface MatrixPath

iterator

public Iterator<MatrixPath.MatrixCellPair> iterator()

Specified by:

iterator in interface Iterable<MatrixPath.MatrixCellPair>